Publications

Mechanistic insights into epithelial-mesenchymal transition mediated cisplatin resistance in ovarian cancer. bulk RNA-seq

Wani TU , Kim HY , Lee GH , Lim YJ , Chae HJ , Kim JY , Yoon H .

Sci Rep 2025;15(1):3053 PubMed

Inhibition of AXL ameliorates pulmonary fibrosis via attenuation of M2 macrophage polarization. scRNA-seq

Kim DH , Im K , Baek IJ , Choi YJ , Lee H , Kim DS , Lee CW , Jeong J , Ban K , Kim SY , Ji W , Lee JC , Kim HY , Lee Y , Yang Y , Yun M , Kim HC , Choi CM , Rho JK .

Eur Respir J 2025 PubMed

Single-cell RNA sequencing uncovers heterogenous immune cell responses upon exposure to food additive (E171) titanium dioxide. scRNA-seq

Perumalsamy H , Xiao X , Han HY , Oh JH , Yoon S , Heo MB , Lee TG , Kim HY , Yoon TH .

J Nanobiotechnology 2024;22(1):765 PubMed

Natal factors influencing newborn's oral microbiome diversity. Microbiome

Kim YH , Lee TY , Kim HY , Jeong SJ , Han JH , Shin JE , Lee JH , Kang CM .

Sci Rep 2024;14(1):28161 PubMed

Linkage between Fuz and Gpr161 genes regulates sonic hedgehog signaling during mouse neural tube development. bulk RNA-seq

Kim SE , Kim HY , Wlodarczyk BJ , Finnell RH .

Development 2024;151(19) PubMed

MAST4 regulates stem cell maintenance with DLX3 for epithelial development and amelogenesis. bulk RNA-seq

Lee DJ , Kim P , Kim HY , Park J , Lee SJ , An H , Heo JS , Lee MJ , Ohshima H , Mizuno S , Takahashi S , Jung HS , Kim SJ .

Exp Mol Med 2024;56(7):1606-1619 PubMed

scRNA-seq analysis discovered suppression of immunomodulatory dependent inflammatory response in PMBCs exposed to silver nanoparticles. scRNA-seq

Perumalsamy H , Xiao X , Kim HY , Yoon TH .

J Nanobiotechnology 2024;22(1):118 PubMed

PIBF1 regulates trophoblast syncytialization and promotes cardiovascular development. bulk RNA-seq

Lee JG , Yon JM , Kim G , Lee SG , Kim CY , Cheong SA , Kim HY , Yu J , Kim K , Sung YH , Yoo HJ , Woo DC , Rho JK , Ha CH , Pack CG , Oh SH , Lim JS , Han YM , Hong EJ , Seong JK , Lee HW , Lee SW , Lee KU , Kim CJ , Nam SY , Cho YS , Baek IJ .

Nat Commun 2024;15(1):1487 PubMed

Adult dental epithelial stem cell-derived organoids deposit hydroxylapatite biomineral. bulk RNA-seq

Kim HY , Cooley V , Kim EJ , Li S , Lee JM , Sheyfer D , Liu W , Klein OD , Joester D , Jung HS .

Int J Oral Sci 2023;15(1):55 PubMed

Identification of exosomal microRNA panel as diagnostic and prognostic biomarker for small cell lung cancer. bulk RNA-seq

Kim DH , Park H , Choi YJ , Im K , Lee CW , Kim DS , Pack CG , Kim HY , Choi CM , Lee JC , Ji W , Rho JK .

Biomark Res 2023;11(1):80 PubMed

Harnessing the dental cells derived from human induced pluripotent stem cells for hard tissue engineering. bulk RNA-seq

Kim EJ , Kim KH , Kim HY , Lee DJ , Li S , Ngoc Han M , Jung HS .

J Adv Res 2024;61:119-131 PubMed

Fabrication of functional ameloblasts from hiPSCs for dental application. bulk RNA-seq

Kim KH , Kim EJ , Kim HY , Li S , Jung HS .

Front Cell Dev Biol 2023;11:1164811 PubMed

Ahnak is required to balance calcium ion homeostasis and smooth muscle development in the urinary system. bulk RNA-seq

Lee JM , Lim TY , Oh SB , Lee SJ , Bae YS , Jung HS .

Cell Biosci 2023;13(1):108 PubMed

MeCP2 dysfunction prevents proper BMP signaling and neural progenitor expansion in brain organoid. bulk RNA-seq

Hong H , Yoon SB , Park JE , Lee JI , Kim HY , Nam HJ , Cho H .

Ann Clin Transl Neurol 2023;10(7):1170-1185 PubMed

Cuspal Shape Alterations by Bmp4 Directing Cell Proliferation and Apoptosis. bulk RNA-seq

Kim EJ , Kim HY , Li L , Tang Q , Kim KH , Ohshima H , Jung HS .

J Dent Res 2023;102(7):825-834 PubMed

A novel IRAK4/PIM1 inhibitor ameliorates rheumatoid arthritis and lymphoid malignancy by blocking the TLR/MYD88-mediated NF-κB pathway. bulk RNA-seq

Yoon SB , Hong H , Lim HJ , Choi JH , Choi YP , Seo SW , Lee HW , Chae CH , Park WK , Kim HY , Jeong D , De TQ , Myung CS , Cho H .

Acta Pharm Sin B 2023;13(3):1093-1109 PubMed

Development of a screening platform to discover natural products active against SARS-CoV-2 infection using lung organoid models. bulk RNA-seq

Lee JE , Jeong SY , Li Z , Kim HY , Kim HW , Yoo MJ , Jang HJ , Kim DK , Cho N , Yoo HM , Kim KH .

Biomater Res 2023;27(1):18 PubMed

Integrative analysis of multiple genomic data from intrahepatic cholangiocarcinoma organoids enables tumor subtyping. WES

Lee HS , Han DH , Cho K , Park SB , Kim C , Leem G , Jung DE , Kwon SS , Kim CH , Jo JH , Lee HW , Song SY , Park JY .

Nat Commun 2023;14(1):237 PubMed

Transcriptomic Comparison Analysis between Ameloblastoma and AM-1 Cell Line. bulk RNA-seq

Li S , Lee DJ , Kim HY , Harada H , Jung YS , Jung HS .

Int J Stem Cells 2022;15(4):415-421 PubMed

Unraveled roles of Cav1.2 in proliferation and stemness of ameloblastoma. bulk RNA-seq

Li S , Lee DJ , Kim HY , Kim JY , Jung YS , Jung HS .

Cell Biosci 2022;12(1):145 PubMed

Ameloblastoma modifies tumor microenvironment for enhancing invasiveness by altering collagen alignment. bulk RNA-seq

Li S , Lee DJ , Kim HY , Kim JY , Jung YS , Jung HS .

Histochem Cell Biol 2022;158(6):595-602 PubMed

Mast4 determines the cell fate of MSCs for bone and cartilage development. bulk RNA-seq

Kim P , Park J , Lee DJ , Mizuno S , Shinohara M , Hong CP , Jeong Y , Yun R , Park H , Park S , Yang KM , Lee MJ , Jang SP , Kim HY , Lee SJ , Song SU , Park KS , Tanaka M , Ohshima H , Cho JW , Sugiyama F , Takahashi S , Jung HS , Kim SJ .

Nat Commun 2022;13(1):3960 PubMed

Inhibition of L-type voltage-gated calcium channel-mediated Ca(2+) influx suppresses the collective migration and invasion of ameloblastoma. bulk RNA-seq

Li S , Kim HY , Lee DJ , Park SH , Otsu K , Harada H , Jung YS , Jung HS .

Cell Prolif 2022;55(11):e13305 PubMed

Fine-tuning of epithelial taste bud organoid to promote functional recapitulation of taste reactivity. scRNA-seq

Adpaikar AA , Zhang S , Kim HY , Kim KW , Moon SJ , Lee JM , Jung HS .

Cell Mol Life Sci 2022;79(4):211 PubMed

A Novel Kinase Inhibitor AX-0085 Inhibits Interferon-γ-Mediated Induction of PD-L1 Expression and Promotes Immune Reaction to Lung Adenocarcinoma Cells. bulk RNA-seq

Kim J , Jang H , Lee GJ , Hur Y , Keum J , Jo JK , Yun SE , Park SJ , Park YJ , Choi MJ , Kim KS , Kim J .

Cells 2021;11(1) PubMed

BBS7-SHH Signaling Activity Regulates Primary Cilia for Periodontal Homeostasis. bulk RNA-seq

Chang PE , Li S , Kim HY , Lee DJ , Choi YJ , Jung HS .

Front Cell Dev Biol 2021;9:796274 PubMed

Spatiotemporal Changes in Transcriptome of Odontogenic and Non-odontogenic Regions in the Dental Arch of Mus musculus. bulk RNA-seq

Lee DJ , Kim HY , Lee SJ , Jung HS .

Front Cell Dev Biol 2021;9:723326 PubMed